If the folder tree is collapsed, you can't determine which folders contain deleted files/subfolders.
Needed: mark parent folder of all levels up to the top folder that folder contains deleted files.
Notice the marks on "virtual_machine" and "w10", if you haven't noticed.
Now:
How it should be:
[Feature Request] Mark the folder that contains deleted files
[Feature Request] Mark the folder that contains deleted files
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Re: [Feature Request] Mark the folder that contains deleted files
Just use file masks File masks. Unselect Existing file.